[Bug 2353869] Review Request: libmbd - Many-body dispersion library

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https://bugzilla.redhat.com/show_bug.cgi?id=2353869

Benson Muite <benson_muite@xxxxxxxxxxxxx> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
              Flags|needinfo?(benson_muite@emai |
                   |lplus.org)                  |



--- Comment #11 from Benson Muite <benson_muite@xxxxxxxxxxxxx> ---
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: If your application is a C or C++ application you must list a
     BuildRequires against gcc, gcc-c++ or clang.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig not called in %post and %postun for Fedora 28 and later.
[x]: Package does not contain any libtool archives (.la)
[x]: Package contains no static executables.
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "*No copyright* Mozilla Public License
     2.0". 37 files have unknown license. Detailed output of licensecheck
     in /home/fedora-packaging/reviews/libmd/2353869-
     libmbd/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[-]: If the package is under multiple licenses, the licensing breakdown
     must be documented in the spec.
[!]: Package requires other packages for directories it uses.
     Note: No known owner of /usr/lib64/gfortran
[!]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/lib64/openmpi/lib/cmake,
     /usr/lib64/gfortran/modules, /usr/lib64/gfortran,
     /usr/lib64/gfortran/modules/openmpi
[ ]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[ ]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[ ]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[ ]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: The License field must be a valid SPDX expression.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in libmbd-
     openmpi , libmbd-mpich , libmbd-openmpi-devel , libmbd-mpich-devel
[ ]: Package functions as described.
[ ]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[ ]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[ ]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[ ]: Package should compile and build into binary rpms on all supported
     architectures.
[ ]: %check is present and all tests pass.
[ ]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[!]: Spec file according to URL is the same as in SRPM.
     Note: Spec file as given by url is not the same as in SRPM (see
     attached diff).
     See: (this test has no URL)
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.


Rpmlint
-------
Checking: libmbd-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-0.13.0-1.fc43.x86_64.rpm
          libmbd-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-0.13.0-1.fc43.src.rpm
============================ rpmlint session starts
============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmp49dxfiyn')]
checks: 32, packages: 7

libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
 7 packages and 0 specfiles checked; 0 errors, 4 warnings, 53 filtered, 0
badness; has taken 0.8 s 




Rpmlint (debuginfo)
-------------------
Checking: libmbd-mpich-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-debuginfo-0.13.0-1.fc43.x86_64.rpm
============================ rpmlint session starts
============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmp47127_aa')]
checks: 32, packages: 3

 3 packages and 0 specfiles checked; 0 errors, 0 warnings, 19 filtered, 0
badness; has taken 0.5 s 





Rpmlint (installed packages)
----------------------------
============================ rpmlint session starts
============================
rpmlint: 2.7.0
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 9

libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0
/lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
 9 packages and 0 specfiles checked; 3 errors, 4 warnings, 70 filtered, 3
badness; has taken 1.3 s 



Source checksums
----------------
https://github.com/libmbd/libmbd/archive/0.13.0/libmbd-0.13.0.tar.gz :
  CHECKSUM(SHA256) this package     :
68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99
  CHECKSUM(SHA256) upstream package :
68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99


Requires
--------
libmbd (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmvec.so.1()(64bit)
    rtld(GNU_HASH)

libmbd-openmpi (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpi_usempif08.so.40()(64bit)(openmpi-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(openmpi-x86_64)
    rtld(GNU_HASH)

libmbd-mpich (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpifort.so.12()(64bit)(mpich-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(mpich-x86_64)
    rtld(GNU_HASH)

libmbd-devel (rpmlib, GLIBC filtered):
    cmake-filesystem(x86-64)
    libmbd(x86-64)

libmbd-openmpi-devel (rpmlib, GLIBC filtered):
    libmbd-openmpi(x86-64)

libmbd-mpich-devel (rpmlib, GLIBC filtered):
    libmbd-mpich(x86-64)



Provides
--------
libmbd:
    libmbd
    libmbd(x86-64)
    libmbd.so.0()(64bit)

libmbd-openmpi:
    libmbd-openmpi
    libmbd-openmpi(x86-64)
    libmbd.so.0()(64bit)(openmpi-x86_64)

libmbd-mpich:
    libmbd-mpich
    libmbd-mpich(x86-64)
    libmbd.so.0()(64bit)(mpich-x86_64)

libmbd-devel:
    cmake(Mbd)
    cmake(mbd)
    libmbd-devel
    libmbd-devel(x86-64)

libmbd-openmpi-devel:
    libmbd-openmpi-devel
    libmbd-openmpi-devel(x86-64)

libmbd-mpich-devel:
    libmbd-mpich-devel
    libmbd-mpich-devel(x86-64)



Diff spec file in url and in SRPM
---------------------------------
--- /home/fedora-packaging/reviews/libmd/2353869-libmbd/srpm/libmbd.spec       
2025-05-17 10:32:24.614646585 +0300
+++
/home/fedora-packaging/reviews/libmd/2353869-libmbd/srpm-unpacked/libmbd.spec  
    2025-05-14 03:00:00.000000000 +0300
@@ -1,2 +1,12 @@
+## START: Set by rpmautospec
+## (rpmautospec version 0.8.1)
+## RPMAUTOSPEC: autorelease, autochangelog
+%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
+    release_number = 1;
+    base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
+    print(release_number + base_release_number - 1);
+}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
+## END: Set by rpmautospec
+
 # Python bindings needs more work
 %bcond python 0
@@ -235,3 +245,6 @@

 %changelog
-%autochangelog
+## START: Generated by rpmautospec
+* Wed May 14 2025 John Doe <packager@xxxxxxxxxxx> - 0.13.0-1
+- Uncommitted changes
+## END: Generated by rpmautospec


Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24
Command line :/usr/bin/fedora-review -b 2353869
Buildroot used: fedora-rawhide-x86_64
Active plugins: Shell-api, C/C++, Generic
Disabled plugins: PHP, fonts, Java, Haskell, Perl, Ocaml, Python, R,
SugarActivity
Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH

Comments:
a) Koji build:
https://koji.fedoraproject.org/koji/taskinfo?taskID=132917945

Some tests fail on s390x
b) Issues from fedora-review:
libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0
/lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
Not sure why this is. Investigating.

libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version

Consider just writing Libmd rather than using %name

libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib

These can be ignored
c) To check linking, create a copr and build Quantum Expresso or do this in a
side-tag. Thanks for unbundling libmbd.
I can also check with https://dftbplus.org

d)
/usr/lib64/openmpi/lib/cmake,
     /usr/lib64/gfortran/modules, /usr/lib64/gfortran,
     /usr/lib64/gfortran/modules/openmpi
Probably want to require gcc-gfortran for libmbd-devel
For the openmpi folders, may need to co-own them or require openmpi-devel


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